PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G247800.4
Common NameB456_002G247800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 416aa    MW: 46470.4 Da    PI: 8.8884
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G247800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-08284331448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WT  E  +lvd+++q+G g+W+ I + +      Rt+ +++++w+++l
  Gorai.002G247800.4 284 WTLAEVIKLVDGIAQYGVGRWTDIKKLLFassAYRTPVDLRDKWRNLL 331
                         ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-12276335IPR009057Homeodomain-like
PROSITE profilePS5129414.078276335IPR017930Myb domain
SMARTSM007171.3E-8280333IPR001005SANT/Myb domain
CDDcd116604.03E-18282332No hitNo description
SuperFamilySSF466898.97E-16282341IPR009057Homeodomain-like
PfamPF002498.0E-7284331IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEDFSCAFDY GWKIGSGGLD SIHGQGGDDL KLEVLDGLLD EVDEVDDIQA AHDLSSACED  60
FLLDIEFPEK FSELDCGPYV GSNLRNSSSE SHSPGGSSNS VGGMSESSIV TVQESNSKNG  120
VLGKMVNCDI HHTIRSECGC QAPVMETIRP SKEHGQDFVE SDDEKPLVSF IVSNKKVKSS  180
VKVTKGGTLL RQKRLRKPTK RYIEEFSRNS TTSGKNKCLK VRSQEEFSQV PSESQSRRGR  240
PKKIMPKMEF ESDCELSASE SEDECKRTKR FKTACDRRKH QRMWTLAEVI KLVDGIAQYG  300
VGRWTDIKKL LFASSAYRTP VDLRDKWRNL LRSSSAHKHN RKELQGETNM KHYVRPLPKT  360
VVCRIRELAT IHPYPKARSP NLSSINSDPS SKQPTTTKAA PINTHGRNLR GKKCN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.5890.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487802130.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468283.10.0PREDICTED: uncharacterized protein LOC105786415 isoform X1
RefseqXP_012468282.10.0PREDICTED: uncharacterized protein LOC105786415 isoform X1
TrEMBLA0A0D2NSH30.0A0A0D2NSH3_G
STRINGVIT_08s0040g01640.t011e-108(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-24TRF-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]